rs48441948 SNP Detail

Summary

• ID
  rs48441948
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:119981675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT TAAAGTTTTT AAAACTTATG
  C
  TTATACATGT AGGGTATGTA CATTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145310716	ENSMUSSNP4622435	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319931526	CHEV_1_121950522	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48441948					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:119981675 () rs orientation: forward

Symbol	Name	Function Class
Gm41936	predicted gene, 41936	1208 bp upstream
Rr30107	regulatory region 30107	927 bp proximal
Rr371936	regulatory region 371936	within coordinates
Sctr	secretin receptor	within coordinates
Tssr8396	transcription start site region 8396	1288 bp upstream
Tssr8397	transcription start site region 8397	1304 bp upstream