rs48443504 SNP Detail

Summary

• ID
  rs48443504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19194568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATTATT TATTATACTT
  GAACAATTTA TTAATTTTGG GGAGCAGGGC ATGTGTGTGA TGGTGAGGGA ACAGGTTTTG
  GAAGTCAACT GTCTCCTCTC TCTGTGGGTC CCCAGGATCA AACTTGGGTC ACCAGCCTCA
  AAGGCAAGAG CCTTCACCCC ACCTCCGCAG CCAACCCTAT GCATTAATTG ATTTGAGACT
  R
  GTTATCATGT AACCCAGGCC TCCTGGAAGC TCTCCTATTG AGGTTGGCCT TGATCCTCCT
  GCCTCCACCT CAGGGAGGGC TGAGACTGCA GGTGTGAGCA CCACACCCAG TTGTCTCTGG
  TTCTGGGAAT TGTTTGTTTT TCTTTTGTTT TAACTGGAGA ACACAGACTC CTCTACCACA
  GATTATGCAG TCACTTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148476766	ENSMUSSNP605090	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48443504					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19194568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	1570 bp distal
Gm23099	predicted gene, 23099	154 bp downstream
Mark4	MAP/microtubule affinity regulating kinase 4	1822 bp upstream
Rr400149	regulatory region 400149	1586 bp downstream
Rr643146	regulatory region 643146	1833 bp distal
Rr643147	regulatory region 643147	1332 bp distal
Rr643148	regulatory region 643148	889 bp proximal
Rr643149	regulatory region 643149	1021 bp proximal
Tssr64858	transcription start site region 64858	1708 bp downstream
Tssr70918	transcription start site region 70918	1958 bp upstream
Tssr70919	transcription start site region 70919	1904 bp upstream
Tssr70920	transcription start site region 70920	1867 bp upstream
Tssr70921	transcription start site region 70921	1843 bp upstream
Tssr70922	transcription start site region 70922	1787 bp upstream
Tssr70923	transcription start site region 70923	1390 bp upstream