rs48444757 SNP Detail

Summary

• ID
  rs48444757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCCCAC GGCGCAGTCG
  GCTACCAGAA GCTGCGAGTG GGGGTAGGTG GGCGGCAAGA AGGGAGGGCC TTTTTTTTTA
  ATGTAGTGTG TTGTGTTTGA AGGAGAGAAT TTATTTCCGC TTCCTATGAT TGCAAAAACG
  TGGGGGCGGG GGGGGGGCGG GAAATCGGTC AGCTTTAGGG CTGTTCTTAA CAGTGTTGGA
  Y
  GTTATTCCCA TTTCACAGAT GAGGAATAAT TTCCGGGAGA ACTGATCTTC ATTCTGATTT
  ATTTAGAGGC AGCTGGAGCC CCTACTTTCT GAGAAAACTT TCACCTCTAC CTGGGGAGGC
  TACCTTCCTA TTGTAAAGCA GATACACAAC ATTTGAATTC CTCCAAAGGT GGCCCTTCAC
  TCTCAGCTTC TCTCCTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136852141	ENSMUSSNP4807238	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48444757					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1151 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	897 bp downstream
Rr685463	regulatory region 685463	1893 bp distal
Rr685464	regulatory region 685464	1462 bp distal
Rr685465	regulatory region 685465	961 bp distal
Rr685466	regulatory region 685466	162 bp proximal
Sox14	SRY (sex determining region Y)-box 14	1451 bp upstream
Tssr91083	transcription start site region 91083	1428 bp upstream
Tssr91084	transcription start site region 91084	1409 bp upstream