rs48445740 SNP Detail

Summary

• ID
  rs48445740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72345326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGCTC TGTAGACCAG
  GCTGGCCTCG ATCTCAGAAA TCTGCCTGCC AAGTGCTGGG ATTAAAGGCG TGCGGTGACT
  ATTATCATTA TTGTTACTAA TGAATATGGG GGGGGGGGTC TAGACCACAG TGGGTGGTGC
  CATCCCTCGG CACGTGGTCC TGGCCTTAGA GAGCACTGGG ATTGCAAGTA TGCATCCACA
  Y
  CTGTTCCGTT CCGTTTTCAC GTGCTCTCCA GTCTCACACT CCGCTAGCGA TCCAGTGGCT
  TCTGTTCCAG GTAAGTAAAT AGGTCTCGTC CGTGTCTCTA AGTTCTCAAA ATATTTCATC
  TCTAAAATGA GTGTATCAGG GATGGAGCAA TGGCTCGGTA GGGGGCCCTG CTGCTCTTTT
  GGAGGGCCCA GCACCCACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136621008	ENSMUSSNP465847	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		T
ss323002351	CHEV_9_72285851	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48445740					SNP	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72345326 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	within coordinates
Mns1	meiosis-specific nuclear structural protein 1	within coordinates
Rr401506	regulatory region 401506	334 bp upstream
Rr682742	regulatory region 682742	1 bp proximal
Rr682743	regulatory region 682743	502 bp proximal
Tssr85997	transcription start site region 85997	28 bp downstream
Tssr85998	transcription start site region 85998	475 bp upstream
Tssr85999	transcription start site region 85999	490 bp upstream
Tssr86000	transcription start site region 86000	535 bp upstream
Tssr86001	transcription start site region 86001	565 bp upstream
Tssr86002	transcription start site region 86002	799 bp upstream