rs48446177 SNP Detail

Summary

• ID
  rs48446177
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88186942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CCCAGAAAAA GCCTGCTGTT CTCTGTGGCT TCCTGTTGGA
  AACAACAGTC TTCATGAAAA ACAATCTGTC AAGGATCAGA ATTGCTGCCT GCAACTTGGC
  G
  GGTGAGACAC GTGTCCAGGT TCAGGGGGGA TCTTGAAGCC ACATAGTTAA TCCTGGGTTT
  GGATGGGGGA GTCAAAGCAG CTGAGGTGGG AGGAGGGCGA G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144898829	ENSMUSSNP1224139	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs48446177					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88186942 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	within coordinates
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	95 bp downstream
Tssr7959	transcription start site region 7959	75 bp downstream
Tssr7960	transcription start site region 7960	52 bp downstream
Tssr7961	transcription start site region 7961	23 bp downstream
Tssr7962	transcription start site region 7962	128 bp upstream
Tssr7963	transcription start site region 7963	156 bp upstream
Tssr7964	transcription start site region 7964	171 bp upstream
Tssr7965	transcription start site region 7965	207 bp upstream