rs48446255 SNP Detail

Summary

• ID
  rs48446255
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74702069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAATTGTT GCAATACTGA
  GATTATTTGC ATAAAAACTA TTCCCTTTAT TGTCTGGAAA GTTACTAGCG ATTTACTGAT
  TAGACTCTAA GCCTGGCCCT GAAAGTTATC AAATGTTCTC AGGGAGTGAA GAAGTGGGAA
  GATATTCAAG TTACAAAGTA GCTTTAGAAA GATACAGCAT GGCCTGAACA GAGGTCCGAG
  S
  TCAGTTGTGT TTGTTGGGAG CCATTCTGTG AGCTGGGCTT ATTAGGGCCC AAGACTTAAC
  TTAAAATGAA TCTATTTCCT GACTTGTAGT TTCCAAGTGA CTTTAGTTTT TTTGTTTGTT
  TGTTTTTGTT TTTGAGACAG GGTTTCTCTG TGCAGCCCTG GCTGTCTGGA ACTCACTCGA
  TAGATCTTGA ACTCAGAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60752367	NES16389472	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48446255					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60752367	NES16389472	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74702069 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	704 bp distal
Gm70804	predicted gene, 70804	1497 bp upstream
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	1516 bp distal
Rr413231	regulatory region 413231	1155 bp distal
Rr413232	regulatory region 413232	15 bp distal
Rr413233	regulatory region 413233	1091 bp distal
Tssr7442	transcription start site region 7442	1342 bp downstream
Tssr7443	transcription start site region 7443	1254 bp downstream
Tssr7444	transcription start site region 7444	1197 bp downstream
Tssr7445	transcription start site region 7445	1121 bp downstream
Tssr7446	transcription start site region 7446	1078 bp downstream
Tssr7447	transcription start site region 7447	794 bp downstream
Ttll4	tubulin tyrosine ligase-like family, member 4	within coordinates