rs48447657 SNP Detail

Summary

• ID
  rs48447657
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13430457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCCCATAG ACTGCTTTCC TAGAGCTTCA CTTTCTCTCA
  ATGGCCGTTG CATCTGCTCA GCCACTCACC AGCATCCTGG CCTACAAGCT GTGCCTTAGC
  M
  ATTATGTTGT ATGTCTCTTT AAGGTAGCCC TATCATTTCT AGTGAGATAA ATTTGCTGGA
  AGGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52145445	NES15237013	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48447657					SNP	A	A	A	A	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52145445	NES15237013	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13430457 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	1228 bp distal
Pex3	peroxisomal biogenesis factor 3	1571 bp upstream
Rr368928	regulatory region 368928	1402 bp downstream
Rr427802	regulatory region 427802	1886 bp distal
Rr427803	regulatory region 427803	1809 bp distal
Rr427804	regulatory region 427804	1604 bp distal
Rr427805	regulatory region 427805	1081 bp distal
Rr427806	regulatory region 427806	97 bp distal
Tssr92399	transcription start site region 92399	1474 bp downstream
Tssr92400	transcription start site region 92400	1455 bp downstream
Tssr96771	transcription start site region 96771	1843 bp upstream
Tssr96772	transcription start site region 96772	1652 bp upstream
Tssr96773	transcription start site region 96773	1628 bp upstream
Tssr96774	transcription start site region 96774	1587 bp upstream
Tssr96775	transcription start site region 96775	1560 bp upstream
Tssr96776	transcription start site region 96776	1547 bp upstream