rs48447682 SNP Detail

Summary

• ID
  rs48447682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11797738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGATT GATTTTAGGC TGCAAAAAAC
  R
  GCCCTGCAGT AAAGAACACT GACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146053674	ENSMUSSNP7161336	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48447682					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11797738 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10634	CpG island 10634			978 bp distal
Cpgi10635	CpG island 10635			230 bp distal
Gm41810	predicted gene, 41810			within coordinates
Gm59062	predicted gene, 59062			within coordinates
Rr544383	regulatory region 544383			1664 bp distal
Rr544384	regulatory region 544384			942 bp distal
Rr544385	regulatory region 544385			316 bp distal
Rr544386	regulatory region 544386			59 bp proximal
Rr544387	regulatory region 544387			81 bp proximal
Stx3	syntaxin 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr155285	transcription start site region 155285			1798 bp downstream
Tssr155286	transcription start site region 155286			1332 bp downstream
Tssr155287	transcription start site region 155287			1107 bp upstream
Tssr155288	transcription start site region 155288			1448 bp upstream
Tssr158398	transcription start site region 158398			1932 bp upstream
Tssr158399	transcription start site region 158399			1491 bp upstream
Tssr158400	transcription start site region 158400			1409 bp upstream