rs48447869 SNP Detail

Summary

• ID
  rs48447869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91365885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACCAATT ACACATGTTT
  GTATACATGT ATAGAGAGAA CACTGTAAAA AAAAATAACT TTATGGCAAT GGAGTCAGGA
  ACAGATAACA AATCCTTTAT AACCTAGAAG CTACCCAAGC TGCCTCAAAG AGAATATTAT
  CTTTAGAAGT TCAGTTTGTA GTGGAAAACT CAGTGCTCAA GTGTTTTTAA TGTAATTCTA
  Y
  CAGATAAGCG CAATGTATAC AAACCCTAAT AGAAATGTAG AAAAGAGAAG ATATCTCTCA
  ATTCACTCCG TGATGAAAGA ATCAATTACT GAGAACAAAA TATACAAAAG ATAAAGAGCA
  ACAGGCCACT TTGCCTTAGG CACATCTACA CAAAACCCTC AAATAGAATT TCAGTAAAGA
  AATGTATTGC TGCAAGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52458806	NES15442064	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48447869					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52458806	NES15442064	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91365885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4953	CpG island 4953	1272 bp proximal
Rr258556	regulatory region 258556	916 bp proximal
Rr265753	regulatory region 265753	1115 bp proximal
Tshr	thyroid stimulating hormone receptor	1882 bp upstream
Tssr114585	transcription start site region 114585	1327 bp upstream
Tssr114586	transcription start site region 114586	1355 bp upstream
Tssr114587	transcription start site region 114587	1879 bp upstream
Tssr114588	transcription start site region 114588	1913 bp upstream