rs48448598 SNP Detail

Summary

• ID
  rs48448598
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41442531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACATGCA AACAAACAAA
  CAAAATGGGG GGGCAGATCT CAATAACCTT TACCACAGAA TTGCAGAAGT TAAAAGAATT
  ACCTTGCATC CAGGCACTTG TTCTATCTCT TAGAATCTGT CTCATTCTTC TTATTGGCCA
  TATTGACATT GGTTTGGGCT AAATAGATGA GGATTCTGAT CAAATAAAGC TCACCTGAAG
  M
  TCACTTCATC AAGCAAATGA AAAACTAGGT CTACTGGAGG AGATACCTAG TTTCTGGCAT
  GAAATGACCC AATCGCAAAA TCTGTTGTTG GATTAAATGA GCCAATGACA AACTCTTTTT
  TGTTGGACTA ATGGCTTTAA CATTCTATCT TCAGACAAGT CAACCCACAC ACAAGAGAAG
  ACACTGAAGC CTGTTGCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61386550	NES16765681	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48448598					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386550	NES16765681	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41442531 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	within coordinates
Mir100	microRNA 100	190 bp upstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677056	regulatory region 677056	1120 bp proximal
Rr677057	regulatory region 677057	1621 bp proximal
Tssr84510	transcription start site region 84510	257 bp upstream
Tssr84511	transcription start site region 84511	763 bp upstream