rs48448995 SNP Detail

Summary

• ID
  rs48448995
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:94203068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTGCTGA GTTTCCCCAC
  TCCCGCCCCT GCTTTGGCTC AGACCTTCGA GATAATGAGC AACTCTATCT GAAGTAATAG
  GTGGACAGAA ATGGACATCA AAGGACCCCC ATCCTTCAAG GACGGGCTGG GATTTGATTT
  AAGAAGAGTT GGATGATTAA GGCAGCAGCT TTGCCTATCA TTAGAACAAT CCAGCCAGCC
  W
  CCTCTTCTAC AGATGCAGGA TACATCTTAA CTGCGCCTTA AGGGCCACGT CAGCCTGGGA
  AGTGTGCAGT GGGAGTTGGT TGGTGTGGTG AGATGGGGAT GGATGTTGCA GGAAGAGTGG
  GCAGTACAGG GCGGGACCAG ACCTCTGAGC TGCACTCTGC AAAGGTTCCT TGGGCATGGG
  TCTGGGTTTT AGCAGTACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144960322	ENSMUSSNP2162143	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48448995					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:94203068 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl2	lipoma HMGIC fusion partner-like 2	within coordinates
Rr274132	regulatory region 274132	933 bp proximal
Rr285346	regulatory region 285346	1534 bp proximal
Tssr120664	transcription start site region 120664	1991 bp upstream