rs48450070 SNP Detail

Summary

• ID
  rs48450070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGTAAC AGTCTGCTCT
  TGTCTCCATA GCTTATCATG TCCAGAGTCG CCCACAGTTT GCTGCAGATC TGTTGCTCAC
  TGTGCAGTTT GAATGAGATG TCTCCAGGTC TCTGGCATCG AGAACACAGT CCCCAGGGGT
  GGCAATGTTT GAGAGGTTTA AGAGGCATGG CCTTGTTAGT GGAAGCACAC CACACTGGAG
  R
  AGATCTCTGT GAGTTCAAAC ACTCACAGCA TTTTGAGGTC ATTTCTCTGT GTTTCTTGCT
  GGGAGCTCCC AGCCACTGCG TCTGCTCTGC CATGGTGGAC TCTCATCCCT CTGGGACCAT
  AAACCCAAAT AATAATTTTT ATTTTTATTT ATTATTATTA TTATTATTAT TATTATTATT
  ATTATTATTA TTATTTTCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148084610	ENSMUSSNP5081774	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321435530	CHEV_4_152022231	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48450070					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	886 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	within coordinates
Rr93365	regulatory region 93365	579 bp distal
Rr97434	regulatory region 97434	within coordinates