rs48451027 SNP Detail

Summary

• ID
  rs48451027
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:33122645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCCCTT ATCAGCAGTT
  CTTATGCATG TGACATGGGT AGGGTTATGA CAGAGAACAT ACCTGAGATA TCTGGACTGC
  CGTCTGTCCC TTTGCACCCA AGAGGACCAT AGCTGGAGCA GAGGAGATGC TCACAGGAGA
  ATAACATACA CGTATTGAAG GGTTGCTTTG ACATAACATC TTCAAAAGAT GGGTGGCAAA
  K
  GTGCCATTTG CTTGAGACAG AGTACTCATG ATGCAGAATC TGGAGGGAAA GGAGATATGG
  AACTCAACAC AGAGGTGAAG GTTCATTGTT CTGAAGCAGG GAAACTTGGG ACTCTACTTC
  TGATTAATAT TTCCAAGATC ATAAGTACCT TAAATCAAAT TTCAAAAATT TATTTTAGGT
  CACAGTCTTT CACATTTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148851120	ENSMUSSNP271929	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48451027					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:33122645 () rs orientation: forward

Symbol	Name	Function Class
Gm11382	predicted pseudogene 11382	within coordinates
Rr476935	regulatory region 476935	41 bp distal
Rr476936	regulatory region 476936	548 bp proximal
Tssr122016	transcription start site region 122016	657 bp downstream
Tssr122017	transcription start site region 122017	1924 bp downstream
Tssr122018	transcription start site region 122018	1963 bp downstream