rs48451156 SNP Detail

Summary

• ID
  rs48451156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69332312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGATCAGT AAAGAGAACT
  AATTTTTTGA GGTGGTTTCT CAGCATTAAG GTGGGGAATT TAATGTTTAT TGGTTTTTTT
  TTCTAGCTAA TCAGCACCCT TTTCATTTAA AAAGATACTT GCAGATGAGC ACAGTATATG
  ATGTGCTTTT ATTTTTCTTG CTTTTCTACA AACATGTGCT AGTCCACTTT GCAAAAGCTC
  R
  GTATTCACCC TTGCAAAGTA CAATTTAATA TCAACGCATC AACATAGCTG AACAATGATA
  AGCATAATGG AATTTGGAAT ATTTCTATCA TGCTCCTCAC CCTGCCCCCA CACTCCTAGC
  ACCCCATATC CCCTCGCCCT GGAACATCAC TAATCTATGG ACTGTCTTTG TAGGTTTGGA
  ATGGTCATTT GGCATGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60627405	NES16288146	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48451156					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60627405	NES16288146	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69332312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	753 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	145 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	895 bp upstream
Rr664454	regulatory region 664454	822 bp distal
Rr664455	regulatory region 664455	351 bp proximal
Rr664456	regulatory region 664456	842 bp proximal
Rr664457	regulatory region 664457	1942 bp proximal
Tssr77601	transcription start site region 77601	888 bp upstream
Tssr77602	transcription start site region 77602	971 bp upstream
Tssr77603	transcription start site region 77603	990 bp upstream
Tssr77604	transcription start site region 77604	1054 bp upstream
Tssr77605	transcription start site region 77605	1063 bp upstream