rs48451511 SNP Detail

Summary

• ID
  rs48451511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56265748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAGCCAAG CAGGGGGCCA TCGTGCATAT GGCCTGATCC
  ACAATGCCTG CACAGTCTCA GGCTAGCTCC CTGTGTGGGC TTCCACAGTG CTGGTCTGGT
  R
  ACTGTCTCAA GCTTGCTCCT AGCCTGGGCC TGGCCCAAGT GGCCCCTTGT GACAGTCATT
  TCTCTTGGGC TTACCTCTGC CCAGGGCCCA TAGTCTCAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60315635	NES15822298	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48451511					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60315635	NES15822298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56265748 () rs orientation: forward

Symbol	Name	Function Class
Gm22271	predicted gene, 22271	202 bp downstream
Gm32257	predicted gene, 32257	within coordinates
Rr549993	regulatory region 549993	36 bp proximal
Rr549994	regulatory region 549994	266 bp proximal
Rr549995	regulatory region 549995	686 bp proximal
Rr549996	regulatory region 549996	712 bp proximal
Rr549997	regulatory region 549997	776 bp proximal