rs48451794 SNP Detail

Summary

• ID
  rs48451794
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:56530279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGTTGATGGA TTTCCATATA TTAAACCATC CCTGCATCCC
  TAGAATAAAA CCTATTTGGT CAGGATGGAT GATTGTTTTA ATGTGTTCTT GGATTGTTAG
  C
  AAGAATTTTA TTGAGGATTT TTGCTTTGAT ATTCATAAGG GAAATTGGTC TGAAGTTCTC
  TTTGTTGGAT CTTTCTGTGG TTTAGGTATC AGAGTAATTG T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147971908	ENSMUSSNP6013102	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48451794					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:56530279 () rs orientation: forward

Symbol	Name	Function Class
Gm66844	predicted gene, 66844	1744 bp downstream
Tssr93379	transcription start site region 93379	1742 bp upstream