rs48452402 SNP Detail

Summary

• ID
  rs48452402
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68257440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGTTGC TTTGTTTTGT
  TTTGTTGTGA TACAGGATCT GTTATTGACT TTGGACCATT GTGATTAGGC TAGTCTAGCT
  AACCAATTAA TCCCTGGGTC TCCAATGTTG GGAATACTAT TACATATAAC CAGGCCTGGC
  TTTTTCATGT GGATCAGAGG ACTGAGTCCA CTCTGGTTTT TCACTGTTGT GTAGCAATCA
  M
  TTTAGTAACA GGGTCTTTTC TCTGGACTGA TTTAAAATAT GTACTCAAAT TTCCCATTGA
  ACCTCATAAA CCCTCCGACA TATATGACAA TTTTTATGCC CATTTAAAGG AAAAGAGGCT
  GATTTTGTTA TGTGTCTATG TGTCTAATCT CTTAAACATA AAGATTGATT ACATCTAATA
  TGAATTGACA GTGAGAGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146487419	ENSMUSSNP5661466	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48452402					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68257440 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	1867 bp upstream