rs48452979 SNP Detail

Summary

• ID
  rs48452979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83715022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT TATTTGTAGT TGTGTTTGTG
  Y
  GTGTGCATCT GTGGTAAATG CACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss136709503	ENSMUSSNP1852893	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs48452979					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83715022 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	1379 bp proximal
Gm57060	predicted gene, 57060	1044 bp downstream
Rr383689	regulatory region 383689	668 bp upstream
Rr401569	regulatory region 401569	1484 bp downstream
Tssr86358	transcription start site region 86358	1676 bp upstream
Tssr86359	transcription start site region 86359	1715 bp upstream
Tssr90761	transcription start site region 90761	1574 bp downstream
Ttk	Ttk protein kinase	1720 bp upstream