rs48452990 SNP Detail

Summary

• ID
  rs48452990
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:107456219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGATAAAGA AGAATGGCCA CTGAAGGCCA GTGGGGAAAA
  CCAAGAAAAG CAGAAAATGG TGAGCAATGT CCCACATAAC AAAGGTATCC AAAACAGTAA
  M
  GGAAGTCTTG TTCCTGTTGA TAGAGGAACT GACCCGGATC CAAGTCACAC CCTAGGTTCT
  ATTCTAGTGT TGCAAGAGAG AGCAGAACTA AGCCTATGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145102830	ENSMUSSNP6469975	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48452990					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:107456219 () rs orientation: forward

Symbol	Name	Function Class
Gm70772	predicted gene, 70772	1677 bp upstream
Rr416649	regulatory region 416649	972 bp proximal
Serpinb10	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	538 bp upstream
Tssr8339	transcription start site region 8339	514 bp upstream
Tssr8340	transcription start site region 8340	529 bp upstream