rs48454037 SNP Detail

Summary

• ID
  rs48454037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38602424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATGACC ATTGCAGTTG
  GCAGGATGGA ATGGACCAGT AACCATTGCA TGTGTCATGG AAATAGAGTG TTGTGGTCAG
  AAGCCAATTG TACTTGATTG ATAGCAGCTG AAAGTGTGAC AATTCAAGCA TCAGGCACAG
  GTTTCTCTTC TGAGACTTGT CATGAGTTAG AACTGTATAA TGGGTGAGTA TCGGGCAGGA
  R
  TTCTAGAGGA TGATCTTGCA GACTGATGAG TCAGAGCAGA GTAAGCCAAA GAAAAGGAGA
  GGAACTTGGA GTGGAAGCCA GGGTCTTGGG TGTGGGGCAG TCTGTCTGTC TTGGCTGCAG
  ATAAACGTGG GTGGATGGGC AGATTGCTGG GAGAGAGAAA AAATGTATCC CAACTGATTG
  CTTCTATATT CTTAAGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60446810	NES16430281	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48454037					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446810	NES16430281	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38602424 () rs orientation: forward

Symbol	Name	Function Class
Rr515900	regulatory region 515900	277 bp distal
Tssr141113	transcription start site region 141113	882 bp upstream
Tssr141114	transcription start site region 141114	1451 bp downstream
Tssr141115	transcription start site region 141115	1540 bp downstream
Tssr141116	transcription start site region 141116	1658 bp downstream
Tssr141117	transcription start site region 141117	1798 bp downstream
Upk1b	uroplakin 1B	within coordinates