rs48454139 SNP Detail

Summary

• ID
  rs48454139
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118405706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCAGCAAT TTTTTCCCCC TTTGGTTTTT CAAGACAGGG
  TTTCTCTGTA TAGCCCTGGC TGTCCTGGAA CTCACTTTGT ATGTAGACCA GGCTGGCCTC
  S
  AACTCAGAAA TCCGCCTGCC TCTGCCTCCC AAGTGCTGAG ATTAAAGGCG TGTGCCACCA
  GTGCCCGGCT CCAGCAACTT TTTTGTGGTG TGGCAACTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149162342	ENSMUSSNP3961788	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321662378	CHEV_5_118717650	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48454139					SNP	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118405706 () rs orientation: forward

Symbol	Name	Function Class
Gm25076	predicted gene, 25076	1061 bp downstream
Gm73266	predicted gene, 73266	1602 bp upstream
Rr618847	regulatory region 618847	1128 bp distal
Rr618848	regulatory region 618848	1184 bp proximal
Rr618849	regulatory region 618849	1553 bp proximal
Rr618850	regulatory region 618850	1624 bp proximal