rs48454507 SNP Detail

Summary

• ID
  rs48454507
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25209031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTCTGT GTCCAATATG
  GGATGGTTTA ACAGTAATTT TTGACAACCA ATTTGACTAA TATATACATA GTACATTATT
  CTTAAAATTT CACCCAAAAA GCAGTTATTT ATCACATGCT TTGGTAATAC TGTTTGAGTA
  ATAATTTTCT GGATAATTAT TGCTTGGCTG GTAAGAGTTA ATATAGATAA TTTTTTGTTA
  R
  TATGTTGAAT ATTATAAATT ATTATTGAAT TGTGAGTACT GTAGAGATGT GTTTACAATA
  TCACTTTATT TTATAGGACC GTTTACCTCT TGCTGTGGTA GGTAGTAATA CTATCATTGA
  AGTTAATGGC AAAAGAGTCA GAGGAAGGCA GTATCCTTGG GGTGTGGCTG AAGGTAAGGT
  TCTTTTCAGT GCATAATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss136234476	ENSMUSSNP3961030	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48454507					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25209031 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	67 bp upstream
Tssr84137	transcription start site region 84137	92 bp upstream
Tssr84138	transcription start site region 84138	140 bp upstream
Tssr84139	transcription start site region 84139	1745 bp upstream