rs48456124 SNP Detail

Summary

• ID
  rs48456124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65366343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA GCTTTCGGAG GAGAGCCTCA
  Y
  ACAGGCATTG ATGCTGTACT TAGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136567852	ENSMUSSNP3961238	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48456124					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65366343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21949	CpG island 21949	1622 bp proximal
Gm47270	predicted gene, 47270	within coordinates
Rr401463	regulatory region 401463	1686 bp upstream
Rr681488	regulatory region 681488	1396 bp proximal
Rr681489	regulatory region 681489	1903 bp proximal
Spg21	SPG21, maspardin	1886 bp upstream
Tssr2916	transcription start site region 2916	1851 bp upstream
Tssr85703	transcription start site region 85703	1865 bp upstream
Tssr85704	transcription start site region 85704	1923 bp upstream