rs48456221 SNP Detail

Summary

• ID
  rs48456221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87687392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA GACTGGTCCT CGCTCCTGGG
  Y
  CCAGAGTCAA TACTTGGCTC CCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132512943	ENSMUSSNP1708442	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323773669	CHEV_11_87610068	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48456221					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87687392 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	394 bp distal
Rr453905	regulatory region 453905	340 bp distal
Tssr3631	transcription start site region 3631	1798 bp downstream
Tssr3632	transcription start site region 3632	1298 bp downstream
Tssr3633	transcription start site region 3633	227 bp downstream
Tssr103989	transcription start site region 103989	1751 bp downstream
Tssr103990	transcription start site region 103990	1339 bp downstream
Tssr103991	transcription start site region 103991	1266 bp downstream
Tssr103992	transcription start site region 103992	1248 bp downstream
Tssr103993	transcription start site region 103993	774 bp downstream
Tssr103994	transcription start site region 103994	692 bp downstream
Tssr103995	transcription start site region 103995	523 bp downstream
Tssr103996	transcription start site region 103996	473 bp downstream
Tssr103997	transcription start site region 103997	303 bp downstream
Tssr103998	transcription start site region 103998	158 bp downstream
Tssr103999	transcription start site region 103999	750 bp upstream
Tssr104000	transcription start site region 104000	862 bp upstream
Tssr104001	transcription start site region 104001	892 bp upstream
Tssr104002	transcription start site region 104002	918 bp upstream
Tssr104003	transcription start site region 104003	991 bp upstream
Tssr104004	transcription start site region 104004	1017 bp upstream
Tssr104005	transcription start site region 104005	1041 bp upstream
Tssr109976	transcription start site region 109976	132 bp upstream
Tssr109977	transcription start site region 109977	779 bp downstream
Tssr109978	transcription start site region 109978	807 bp downstream
Tssr109979	transcription start site region 109979	859 bp downstream
Tssr109980	transcription start site region 109980	1047 bp downstream