rs48456478 SNP Detail

Summary

• ID
  rs48456478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69888747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGA GCAGCAACCC CCGTTGGCCA
  Y
  CCCCTCCCCG CCCCCCAGGG CTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144574054	ENSMUSSNP4735829	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324406514	CHEV_13_69879506	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48456478					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69888747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5814	CpG island 5814	within coordinates
Gm60959	predicted gene, 60959	within coordinates
Gm60969	predicted gene, 60969	within coordinates
Rr482198	regulatory region 482198	1982 bp distal
Rr482199	regulatory region 482199	249 bp distal
Rr482200	regulatory region 482200	693 bp distal
Rr482201	regulatory region 482201	606 bp distal
Rr482202	regulatory region 482202	288 bp proximal
Tssr123143	transcription start site region 123143	1677 bp upstream
Tssr123144	transcription start site region 123144	1655 bp upstream
Tssr123145	transcription start site region 123145	1638 bp upstream
Tssr123146	transcription start site region 123146	1191 bp upstream
Tssr123147	transcription start site region 123147	739 bp upstream
Ube2ql1	ubiquitin-conjugating enzyme E2Q family-like 1	739 bp upstream