rs48456494 SNP Detail

Summary

• ID
  rs48456494
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104698296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTTTGG AGGCTCCTCC
  CAGCCCAGGC TCTGGTTCCC TCCCCCACAG CCTTCGCTTC ATCTCTACTC TGTCTGGCAT
  GATCCTTGCC AGGCTGTGTA GGTCTGGAGA CCTCACTGAC CCGGTCAGCT CCCTGTGGTC
  TGAACTGCTC GTTCACGTGT GCTGGGGTGT AGGACACATA TAAACTCTGA GAAGCTGACT
  S
  CTTCCTTATC TTGAGTCACA GGGAGGTGTC TGCTGGGCCT AAGGGTCAGC TGGTCACAAG
  GAGGAAGGGG CTGTTCCAGA GAGTGGGTGG AGGTGATTCC CGAGTGGGTT TAGCTCCGTC
  ACAGCAATGC TGTGATAGAT GTGTGGCTCC CCACAGTGTG GTCATTGTCC CCTGTCAGGG
  GCTGAGTGAC CCAGTGTTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60431842	NES15936380	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs48456494					SNP	C	C	C	C	C	C	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431842	NES15936380	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104698296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	1283 bp distal
Gm66976	predicted gene, 66976	within coordinates
Rhoc	ras homolog family member C	within coordinates
Rr77009	regulatory region 77009	within coordinates
Tssr31059	transcription start site region 31059	1934 bp downstream
Tssr34890	transcription start site region 34890	1065 bp downstream