rs48456522 SNP Detail

Summary

• ID
  rs48456522
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAACTTCT TGATGCATAT TGTTAAGTAA CAAGGCGAGA
  CAACCATCTA AAACTGAATG GAGCCAGCCT CGACAGTCCA GGTGATGTCT AAAGGGAGAC
  S
  TTCTGAAGGG CCTTCAGGTA TGGGGCTCAG GGAAGAGCCT GGAAGTAGTC ATGGTGAACA
  CGGGACGACA GTTAGAGATG CGGAACCGCG GTTAAGAGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss148681179	ENSMUSSNP5368464	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
ss322134955	CHEV_7_31299639	CHEVERUD	SCREENING_POP	f	SNP		G		C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs48456522					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214045 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	502 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	1218 bp downstream
Tssr2186	transcription start site region 2186	609 bp upstream
Tssr65778	transcription start site region 65778	525 bp upstream