rs48456918 SNP Detail

Summary

• ID
  rs48456918
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65508741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGATTTT TACCCACACA
  ATGGGGATTT TCTTTCTTTC CTGTTACTAG GCAAGAAAGT TTCCAGTGTG TCCCAACGAG
  CTTTCTTGGC ACCCTCCATG TCACCAAGAG TTATCAAGTG AGCTGTGGAG TACCAGAAGC
  AAGGCTCGAT ATTGGGAAAC GACACACTGT TGTGAATTTA TACAGGAATG ATCTTGGGGG
  G
  TTATCTCCTT ATTAGCTAGT TTTTGGCAAA GCAACCCAGA GGGCCCCAAA GAAGTCTCTA
  TTCTTCTAAG GCTACAGTAA ACAGTAGGGA GAAAAGAGAT CAGGAAGGCA AAAGCCAAGA
  GACCTGAACC TCAGCAGGAC CTGAGAACAC TCAGGGCCCA GCTCCTTGTC TGCATGGCAA
  GGTTATGAAT GGCACTTCCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147311768	ENSMUSSNP2411372	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs48456918					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65508741 () rs orientation: forward

Symbol	Name	Function Class
Alpk2	alpha-kinase 2	within coordinates
Tssr151596	transcription start site region 151596	within coordinates
Tssr153695	transcription start site region 153695	254 bp upstream