rs48457510 SNP Detail

Summary

• ID
  rs48457510
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24927144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACTGGG GAGATCGAGG
  CCAGCCTGGT CTACAAAGTG AGCTCCAGGA CAGCCAGGGC TATACAGAGA AACCCTGTCT
  CGAAAAACAA AAACAAAACA AAACAAAACA AAACAAAAAA AGCTTCCCCT ATCACATGCT
  TCTGTAGATC TTGTCCAGGA CTTTCGCCTC TGTGCCCCGC CCCCAACCCG ATGTGTGTTT
  A
  TGTGTGTGTA ACTGTCTGTC TGTCTCGCTC TCCTTTCCTC CTTCCCTCCC TCTCCCCCCA
  CTCCCTTTTG TGTTTTTCGA GATACAGATT CTCTGAAGCA CTGGTTGTCC TAGAACTCGT
  TCTATTGAAG ATCTGCTTAC TTCTACTTCG CGACTGCTGG ATTTAAAGGC GTGTCCTTCC
  GGCTTGTTTT CTTTTCATTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145361787	ENSMUSSNP4679263	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48457510					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24927144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	264 bp distal
Rr405091	regulatory region 405091	318 bp downstream
Rr523395	regulatory region 523395	521 bp distal
Rr523396	regulatory region 523396	20 bp distal
Rr523397	regulatory region 523397	490 bp proximal
Rr523398	regulatory region 523398	692 bp proximal
Tbl3	transducin (beta)-like 3	517 bp upstream
Tssr146772	transcription start site region 146772	560 bp upstream
Tssr146773	transcription start site region 146773	509 bp upstream