rs48457640 SNP Detail

Summary

• ID
  rs48457640
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4645504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGGGAGG AAACTGAACA
  GAAATAACAG TGAATAGACC GAGAAATAAT GTATTTTCAT AACTCTAAGA GTGCAACGTA
  TTTCATTTGC AGTGTTTTGA GAGGTTCAAT TAAAGGGCAG TTTCACAGCC ATATGAAGAC
  ACTAAATAAC GTTGTTATAT ACTGTCAGCC ATATCAAGAC ACTGAATAAA ACTCTGTTAT
  W
  TACTGTACAG CTATTCAACT GTGATTATGG CGGACAATCA GGGAGTTACT ACCAGATGGG
  AGACACTTAA TTTGTTGTAT TTAACCACCT GGCTTATGTT TTCTGAATCC TTTTCATGGT
  CAATGCATAT TCATTTGAGG AAAGGTCTGG TTTAATAAAA ATTGAGTACA TGTTTACAAC
  TCTGTTGGAT AAAAGTATAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61339429	NES16948985	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs48457640					SNP	T	T	T	T	T	T	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339429	NES16948985	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4645504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	1580 bp distal
Gm3625	predicted gene 3625	1773 bp upstream
Gm48678	predicted gene, 48678	within coordinates
Itsn2	intersectin 2	within coordinates
Rr265387	regulatory region 265387	903 bp distal
Tssr3767	transcription start site region 3767	1672 bp downstream
Tssr112563	transcription start site region 112563	1640 bp downstream
Tssr115638	transcription start site region 115638	1809 bp upstream
Tssr115639	transcription start site region 115639	1768 bp upstream
Tssr115640	transcription start site region 115640	1751 bp upstream
Tssr115641	transcription start site region 115641	1714 bp upstream
Tssr115642	transcription start site region 115642	1692 bp upstream
Tssr115643	transcription start site region 115643	348 bp upstream