rs48458361 SNP Detail

Summary

• ID
  rs48458361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAGGCT CTCTCCACCC
  CTCACCATCA GATCTCCCGT ACCCCAAGTC ACCCTCAGAG GATAGGGAAA GTATTATACC
  TGAGAGGTCG GTTGGCTGGG CAAGATTCAT CCAACTGAAA AGCAGTCCCC CACACAGGCC
  TGTCAGCAGG AGCCCTGGAC CTCTCCCCTG GAGGCCCATA AGAAGTCGCC TCCACCTCAG
  Y
  CGTAGTCCTA GGAATCCAAC AGGGGTTCTA AGCCCTGGCT ACAGACAAGA AGGAAGCTGA
  AATTAAAGTC CCAAGATTTG CAGGGGTGAA AACTCCTCTA TTATAAGCTT GTGGAGAGAT
  GAGAGTGATT GGGTCCTATC ATCTGCTGGG AAATGTGAGG CCTTTGGCTC TAAACTGCCT
  ATGATTTCCT AAGCAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61023710	NES16108732	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48458361					SNP	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61023710	NES16108732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	944 bp distal
Cpgi19332	CpG island 19332	1441 bp proximal
Hddc3	HD domain containing 3	1662 bp upstream
Rr400403	regulatory region 400403	1041 bp downstream
Rr400404	regulatory region 400404	1501 bp upstream
Rr649870	regulatory region 649870	733 bp distal
Rr649871	regulatory region 649871	1074 bp distal
Rr649872	regulatory region 649872	405 bp distal
Rr649873	regulatory region 649873	1181 bp proximal
Rr649874	regulatory region 649874	1625 bp proximal
Tssr67435	transcription start site region 67435	1649 bp upstream
Tssr67436	transcription start site region 67436	1723 bp upstream
Tssr73215	transcription start site region 73215	1432 bp upstream
Tssr73216	transcription start site region 73216	1292 bp upstream
Tssr73217	transcription start site region 73217	1232 bp upstream
Tssr73218	transcription start site region 73218	1211 bp upstream
Unc45a	unc-45 myosin chaperone A	442 bp upstream