rs48459324 SNP Detail

Summary

• ID
  rs48459324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151336128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGGGTT TCAAGACAGG
  GTTTCTCTGT GTAACCCTGG CTGTCCTGGA ACTCACTCTG TAGACCAGGG TGGCCTCGAA
  CTCAGAAATT CGCCTGCCTC TGCCTCCCAA GTGCTGGGAT CAAAGGCGTG GGCCACCACT
  GCACAGCTGC CAATTTTCAA GTTTAGCTAT GTGTTTCCAA ACTTGGCCTT AAAACTACAA
  R
  ATGATTTAAA AATGTGCATC TCACTAGTTT TAGAGCATGT TTTGAGAATC TGAGTATCTA
  TCATTAGGAA ATAAGGTTTC CAGGCTGGAG AGATGGTTCA GCTAACTGCT GACTGCTCTT
  CCAGAGTCCT GAGTTCAATT TCCAGCCACC ACATGGTAGC TCACAGTCTG TAATGGGATC
  CCTCACTCTC TTCTGGTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60818538	NES16500319	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs48459324					SNP	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60818538	NES16500319	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151336128 () rs orientation: forward

Symbol	Name	Function Class
Rr372239	regulatory region 372239	within coordinates
Rr420294	regulatory region 420294	1069 bp proximal