rs48459837 SNP Detail

Summary

• ID
  rs48459837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70168350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGACATCC TCGGGCTTCA TTCAAAGCTC TCCCCCTGTG
  GCTCACTAGT CGTGTGTTCT AACTTCTCTC ATCAACTGAA ACACTGCTTG CATTTCTCTT
  Y
  GCCAACTTCT GGGACCCTCT GAACTCTGCT GCAGCCTCTT TAACTTATGC TGGTTGTGTA
  AACAGCATAT GTGGATATAA TTATATATTT ACCGTGTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss60634604	NES16285203	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T		C	C		C
ss322696641	CHEV_8_72239599	CHEVERUD	SCREENING_POP	f	SNP					C			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs48459837					SNP	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60634604	NES16285203	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70168350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20415	CpG island 20415	678 bp proximal
Gm51532	predicted gene, 51532	1452 bp upstream
Gm64048	predicted gene, 64048	858 bp upstream
Rr400882	regulatory region 400882	640 bp upstream
Rr400883	regulatory region 400883	1165 bp upstream
Tssr77669	transcription start site region 77669	880 bp upstream
Tssr81531	transcription start site region 81531	715 bp downstream
Tssr81532	transcription start site region 81532	737 bp downstream
Tssr81533	transcription start site region 81533	1127 bp downstream
Tssr81534	transcription start site region 81534	1150 bp downstream
Zfp869	zinc finger protein 869	within coordinates