rs48460314 SNP Detail

Summary

• ID
  rs48460314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30119865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC CGGCAGTGTT GTAAGAGAGA
  R
  GGAGAGATTT GGTCATCACA GTTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148677448	ENSMUSSNP4210789	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss322134103	CHEV_7_31205459	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48460314					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30119865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	977 bp proximal
Hcst	hematopoietic cell signal transducer	586 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	1292 bp upstream
Rr368301	regulatory region 368301	498 bp downstream
Rr400239	regulatory region 400239	1113 bp upstream
Rr400240	regulatory region 400240	1692 bp upstream
Rr644812	regulatory region 644812	768 bp distal
Rr644813	regulatory region 644813	96 bp distal
Rr644814	regulatory region 644814	802 bp proximal
Rr644815	regulatory region 644815	1476 bp proximal
Tssr65711	transcription start site region 65711	775 bp downstream
Tssr65712	transcription start site region 65712	748 bp downstream
Tssr65713	transcription start site region 65713	491 bp downstream
Tssr65714	transcription start site region 65714	1284 bp upstream
Tssr65715	transcription start site region 65715	1832 bp upstream
Tssr65716	transcription start site region 65716	1949 bp upstream
Tssr65717	transcription start site region 65717	1993 bp upstream
Tssr71741	transcription start site region 71741	664 bp upstream
Tssr71742	transcription start site region 71742	568 bp upstream
Tssr71743	transcription start site region 71743	78 bp upstream
Tssr71744	transcription start site region 71744	67 bp upstream
Tssr71745	transcription start site region 71745	1168 bp downstream