rs48460885 SNP Detail

Summary

• ID
  rs48460885
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144485124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTACTGACG TTATGTTGTG CTTGCAGACA GGCACCTAGC
  ATGGCTGTCT TCTGAGAGGC TCTACCAGCA TCTGAGTGAG ACGGATGCAG ATGCTTACAG
  M
  TAACCATTGG ATTGAGGTTG TGGGAGCCCT GTGGAAAAGT TAGGGGAAGG ATTGCAGGAG
  CTGAAGGGAA GAGCAACACC ATAGGAAGAC CAACAGTCTC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss60813219	NES16484892	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs48460885					SNP	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60813219	NES16484892	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144485124 () rs orientation: forward

Symbol	Name	Function Class
Gm56327	predicted gene, 56327	276 bp upstream
Tssr14112	transcription start site region 14112	272 bp upstream