rs48461416 SNP Detail

Summary

• ID
  rs48461416
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108888268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTC CACACTTACC GAGAAGCAGG
  M
  AGCAAGGCAC TCCGCTGGGT CTGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61451637	NES16833315	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48461416					SNP	C	C	C	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451637	NES16833315	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108888268 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	547 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	419 bp upstream
Rr686956	regulatory region 686956	1335 bp distal
Rr686957	regulatory region 686957	41 bp proximal
Rr686958	regulatory region 686958	462 bp proximal
Rr686959	regulatory region 686959	608 bp proximal
Shisa5	shisa family member 5	1423 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr87221	transcription start site region 87221	1940 bp downstream
Tssr87222	transcription start site region 87222	1891 bp downstream
Tssr91571	transcription start site region 91571	1477 bp upstream
Tssr91572	transcription start site region 91572	929 bp upstream
Tssr91573	transcription start site region 91573	795 bp upstream
Tssr91574	transcription start site region 91574	562 bp upstream
Tssr91575	transcription start site region 91575	515 bp upstream
Tssr91576	transcription start site region 91576	429 bp upstream
Tssr91577	transcription start site region 91577	16 bp downstream
Tssr91578	transcription start site region 91578	476 bp downstream
Tssr91579	transcription start site region 91579	511 bp downstream