rs48461742 SNP Detail

Summary

• ID
  rs48461742
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31219894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTGCGA TGCATTGACA
  AGGAGCTTAT GAATAATTTG TTTCTTCATC CAGACTATGT GTGTTCCTCC TATGGGAAAC
  ATGCTTGCTA CTGTACCCTG ACAGACTTAG ACTCTGGGGT CTTTCGAAGC CTTTGGCCAT
  TAGCAGGGTG TGGCTAAGAG ACACAGTGCC GGATAATTCA ACCATCCTGC TTTCTCACAC
  W
  GTGGCTCCCC CTGCAAACAC AGCAGACTCC CCAGGACACT CACTGTGGCG CATGCTCCAG
  TTTGCAGAAG CACAGGGCTA GTGGTTATAG CAGTGTTGTC TCTGCAGGGG CTGCTGCTGC
  CTCTCTTTGC AACCTGACCC TGACCTTGTT CCCCTCCCCC ACCTAATTCC TTTAGCGCAG
  GCTTTTCATT AGTCCCAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60562813	NES16493426	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48461742					SNP	T	T	T	T	T	T	A	T	T	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562813	NES16493426	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31219894 () rs orientation: forward

Symbol	Name	Function Class
Tssr143635	transcription start site region 143635	1016 bp upstream
Umodl1	uromodulin-like 1	within coordinates