rs48462489 SNP Detail

Summary

• ID
  rs48462489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46248969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCATACAA ACACTAATAA
  ACAAAGAGGA TTAAGGGCCG GACTCCATGG GGGACTTGGC TCCTGAAGCA GAAGGAGGGT
  ATGTGTGCCC GCATGTCATT TGTTGGACTC TGTCATTCAG CTGAGGCACC TCGGGAACAG
  CAATGCTGTT TCTGAGTTGG TTCAGAAAGC GTGGGTTCAT GTGCCTCATG TGTGTCGGCA
  M
  CTAGAGGTTG TGTTCTGAAT CTGGGTATAT GTATCTGAGA GTGTCCTCGT GATAAGGTGA
  ACTTCCTGGG CGTGTCACCT GTGTAAATGG GTGTGCGCAT CTTGAGTGTG TGCCTGGATC
  TTTTGGTCTG TGCTTCTTTT CATCGGGGTG TGAATAGATG TAGGAGGCTG TATTTGTGTA
  GGTGGAGGTG GGTCTGGGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61392171	NES16761194	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C		C	A	C		C
ss322944028	CHEV_9_46145754	CHEVERUD	SCREENING_POP	f	SNP									A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48462489					SNP	C	C	A	C	C	C	C	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61392171	NES16761194	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46248969 () rs orientation: forward

Symbol	Name	Function Class
Rr383308	regulatory region 383308	within coordinates
Rr678124	regulatory region 678124	within coordinates
Rr678125	regulatory region 678125	271 bp proximal