rs48462531 SNP Detail

Summary

• ID
  rs48462531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAGCTCT CCCACAGTTC TGCGTGGGTT TTTTCTGTAG
  TTGTCTGTCC CCTGGCTTCC CCCTCTGGTC CAGTTTCAAT CTATTTGTAA CCCTACCAGC
  Y
  GTAAGAACCC CCTAGACAGA AACTGCCTGT CAAGCATTGT TGCATTTACT CTCAGCCACT
  TTTAGAATCC TTCTAGGACA CTGATGTTTA AGCTAATCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147514365	ENSMUSSNP5698496	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48462531					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1023 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	1340 bp distal
Rr564423	regulatory region 564423	1351 bp distal
Rr564424	regulatory region 564424	1203 bp distal
Rr564425	regulatory region 564425	702 bp distal
Sppl2a	signal peptide peptidase like 2A	1192 bp upstream
Tssr26085	transcription start site region 26085	1337 bp upstream
Tssr26086	transcription start site region 26086	1294 bp upstream
Tssr26087	transcription start site region 26087	1263 bp upstream
Tssr26088	transcription start site region 26088	1200 bp upstream
Tssr26089	transcription start site region 26089	1186 bp upstream
Tssr26090	transcription start site region 26090	547 bp upstream