rs48462835 SNP Detail

Summary

• ID
  rs48462835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86347591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTAGATAT GGTACTTCCA
  AGACTGAAAC AGTTGCAAAA ACCAGTGTAA CCACTAAAAG ACTGGTGGAC TTGTATCTTG
  ACTGACCATT CATGTAACTT TTGAGAAGCT AAAAGGAAAT GAGTAATTTC TGATATACAT
  TCCCACTATA CTGCAGAAAT AAAAGAAGTC ATAACTTAAT TGCTCCTACA AGATACATTT
  Y
  GAAAGTTTGA TGCAGTAAAA GATCTAGTGT GGTATAAACA AATATATCAG GCCATAGGAT
  TTCAGTTGGA CACCTTTTAA GAATGGAAAG CTGTTATTTA AAACATAGCT TGTATAATGG
  GGATTGTCTT AGTTAAGGTT GCTTTTGCTG TGATGAAGCA ACAGTACCAA AGGCATTTGG
  GGAGGAAAGC ATGTGTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136756057	ENSMUSSNP2225757	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323056335	CHEV_9_86359145	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48462835					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86347591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	421 bp distal
Cpgi22102	CpG island 22102	1379 bp proximal
Dop1a	DOP1 leucine zipper like protein A	1603 bp upstream
Rr684095	regulatory region 684095	599 bp distal
Rr684096	regulatory region 684096	98 bp distal
Rr684097	regulatory region 684097	559 bp distal
Rr684098	regulatory region 684098	1126 bp proximal
Rr684099	regulatory region 684099	1543 bp proximal
Rr684100	regulatory region 684100	1627 bp proximal
Tssr86391	transcription start site region 86391	1625 bp upstream
Tssr86392	transcription start site region 86392	1635 bp upstream
Tssr86393	transcription start site region 86393	1686 bp upstream
Tssr90780	transcription start site region 90780	595 bp upstream
Tssr90781	transcription start site region 90781	580 bp upstream
Ube3d	ubiquitin protein ligase E3D	588 bp upstream