rs48463359 SNP Detail

Summary

• ID
  rs48463359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127204353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCATTTAG CTGAAGATGT
  GAAGATTAAC TCATCATCCT AAAAGCCATC CTTGAGTTCT TCAGAACATC TTGCTGGACC
  AGCACCGCAG TGATGTGGGG GAACCACACC CTGACCAGGA CTGCTTAAGT AAGCGTAGCT
  CACAGTCTTT AAAAACCTAA TCAGCATTCT AAAGTTGGAG TTGGGGTTCC TGGACTTTAT
  R
  TCTTCCTCTC CCTTCCCCAA TGTGGCCAAA TCAATCAAAT CTCCCTTTGT CTGCTTTTCA
  CCACTATTCC ATTGTTCCTC TCTTTAGCCA AAATACTGGG ATGGGTGGCC AAGCCTCACC
  TGTCGTGGTT GCTGGAGGCC AGGAAAAACC CTAGCAGAGA AAATTATCCT CTTTATTTTA
  ACTTCCTATG CATTCGGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135862701	ENSMUSSNP2894499	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320953875	CHEV_3_127113622	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48463359					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127204353 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	1789 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	1748 bp distal
Rr584774	regulatory region 584774	1155 bp distal
Tssr35571	transcription start site region 35571	1817 bp upstream
Tssr35572	transcription start site region 35572	1723 bp upstream
Tssr35573	transcription start site region 35573	1696 bp upstream
Tssr35574	transcription start site region 35574	1661 bp upstream
Tssr35575	transcription start site region 35575	1640 bp upstream