rs48465012 SNP Detail

Summary

• ID
  rs48465012
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28945608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTATTCA TGGTGAGTGG
  GGATCAGGGC GGGCAAGGCT GAGGCCCCAG GCTTCCCAGG CAGGCTTGGG GAGGTCTTTG
  GAGCATCCAA GTACCAAATC TGGGGGCTAG GAGAGCCTCC TGGAAGAGGC AGACTCTGTG
  CGCCCTTCTG AGAGCAAGAG CCAGCCTGGA TGCTAGGCTA GGGCCAGGGT TGCCCAGTAC
  W
  CAGGCTCTGC TTGGGCTCTC ACTCTTACTT CTGTCTCTGT ATGCTGGGCT TTCTGCCAAT
  ATGCCCCTGA GTCCCTCCAG CTGTGGTAAA ATACTGACTA GGGGCCATGT TTGGACTGCC
  GTGTACTCGG AGTGAATCAC CTCCTCTACT TAAGCCTCAG TTTCTTTTGT AAAATGGGAT
  GCCTGGTGAC TGCACCGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60986971	NES16139435	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48465012					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60986971	NES16139435	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28945608 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	1338 bp downstream
Cpgi18753	CpG island 18753	1052 bp proximal
Gm73451	predicted gene, 73451	1432 bp upstream
Rr644522	regulatory region 644522	867 bp distal
Rr644523	regulatory region 644523	942 bp proximal
Rr644524	regulatory region 644524	1361 bp proximal
Tssr65617	transcription start site region 65617	433 bp downstream
Tssr65618	transcription start site region 65618	1452 bp upstream
Tssr71635	transcription start site region 71635	939 bp downstream
Tssr71636	transcription start site region 71636	1543 bp downstream
Tssr71637	transcription start site region 71637	1743 bp downstream
Tssr71638	transcription start site region 71638	1761 bp downstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	within coordinates