rs48465675 SNP Detail

Summary

• ID
  rs48465675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTCAAA AAGGAAGAAA
  GAAAGAAAGA AAGGAAAGAA GAAAGAAAGA AATGAAATGA GCGTGTGAAG CCAACTGTGT
  TTCTATCTAC CCATTCCTCA ATTTCTAGGC TGCACGGACA CCTTGGGGGA TATGGATTAT
  TCCATTTTAG ACCCCAGAGA CCTCTGTTCA GCCTGTGGGG CATCCCTCTG TAACTGCAGC
  R
  CCATGGCAAC CACCAAGCCT GTCAGAGAGT CCAGTCATTA GGCTTTCCCC TGAGCCTTAT
  CTCCCCAGCT GCCAGCCCAG ACACAAAAGC TACCTGCCTG GTGGAATACA CTTAGCAGCT
  GGCTGTCTCC ACTTCTCAGA ACCCTTTGGG GAGATGCCAA GGTCTTGCTT ATCCCTCATA
  CTTCAGAGCT GCCAACGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61023708	NES16108734	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48465675					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61023708	NES16108734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	1379 bp distal
Cpgi19332	CpG island 19332	1006 bp proximal
Hddc3	HD domain containing 3	1227 bp upstream
Rr400403	regulatory region 400403	1476 bp downstream
Rr400404	regulatory region 400404	1066 bp upstream
Rr649870	regulatory region 649870	1168 bp distal
Rr649871	regulatory region 649871	1509 bp distal
Rr649872	regulatory region 649872	840 bp distal
Rr649873	regulatory region 649873	746 bp proximal
Rr649874	regulatory region 649874	1190 bp proximal
Tssr67435	transcription start site region 67435	1214 bp upstream
Tssr67436	transcription start site region 67436	1288 bp upstream
Tssr73215	transcription start site region 73215	1867 bp upstream
Tssr73216	transcription start site region 73216	1727 bp upstream
Tssr73217	transcription start site region 73217	1667 bp upstream
Tssr73218	transcription start site region 73218	1646 bp upstream
Unc45a	unc-45 myosin chaperone A	877 bp upstream