rs48465677 SNP Detail

Summary

• ID
  rs48465677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:118688935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCATTC AATCACGTTT
  GCCTTCACAA TCAGCCTAAA AACTCCCCAA AGACAGGATC CGTGTCTATT TTGTTGGATA
  TTTTCTATTT CTAGTGCCTG GGATCCAACT TCACATGTAG GCATTTAGTA AGGACTTGGC
  AGACGAATGT GGTCTGCAAC AGATGTTAAA AGGATTCTAT GACTTCAGTG TCTTTCTTCT
  Y
  AAATGTAAGC ATGCTCAGGA CAAAAGCCCA GTAATTCTAA TCCTAGAGAA AGGGGAAAAT
  AAATAGGGCA TTAACTTTTG GGGACAAAGA TCACAAATGA GCCCATGTTA TTTGTATGCT
  TATTTACTAA AAGTCTAGAT AAACTGCTTA TAATCAATTA CATAGTGTTC CTGCAAACAA
  CTGAAAACGT CAATTTTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss61322049	NES16929551	PERLEGEN	MM_PANEL2	f	SNP	C		T	T
ss323503893	CHEV_10_118290086	CHEVERUD	SCREENING_POP	f	SNP		C			T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs48465677					SNP	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61322049	NES16929551	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:118688935 () rs orientation: forward

Symbol	Name	Function Class
Gm67702	predicted gene, 67702	within coordinates
Rr226050	regulatory region 226050	135 bp distal
Rr226051	regulatory region 226051	667 bp proximal