rs48466904 SNP Detail

Summary

• ID
  rs48466904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45294061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGG GAACTCCAGG GTCTCGTCGA
  R
  GGAGAAGTGG GTTGGAAACA GCGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149139945	ENSMUSSNP2491369	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48466904					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45294061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19076	CpG island 19076	892 bp distal
Cpgi19077	CpG island 19077	93 bp distal
Mamstr	MEF2 activating motif and SAP domain containing transcriptional regulator	within coordinates
Rr400317	regulatory region 400317	672 bp downstream
Tssr66604	transcription start site region 66604	671 bp downstream