rs48467056 SNP Detail

Summary

• ID
  rs48467056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76555677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCCGG AAGACCTGGC
  TTTCCTCGCT CCCCCTGGAA GGCAGAGGAA ATCAGCTCAG GGGAGACCAG GTCAGGAGCC
  ACAGCCATCT GCTCTGGAAA GCTGGGCAAG ACCCCTTGTG CATGAAAAGT TTCTTCAGAG
  CGATTCCATC CAGGCTCCAG AGTCGTCCTG GCCTTGGCTT CTGGACCTGC CTGGCATCTG
  R
  GAGTCTTACC CACCAGGGTC CTTATGCTGT GTCATCATGG CTGGATTTGG GCTTAGAGTT
  GTGCCTTTGC ATCAAGGCTG AACTGATGAT ACGTTGCTCC AGGCCCAGAG GAACAGGGAG
  ACCCAGCAGA GAGACTCCCC AAAGGGCCAT AGAAGCTCTG TGGATGATGG CCATGTGGTA
  GGAAAACCAT CCTAGACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288925	NES16903905	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48467056					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288925	NES16903905	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76555677 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	Intron
Tssr94199	transcription start site region 94199	1993 bp upstream
Tssr98202	transcription start site region 98202	676 bp upstream
Tssr98203	transcription start site region 98203	1613 bp downstream