rs48467266 SNP Detail

Summary

• ID
  rs48467266
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37297893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atggagctt gagttatagg catttgtgag
  caaccagaca tgtgtgcagg gaactgaatt cagggcagtg agtgctctta ctgagccatc
  tctctggctc cTCAGGGAAG TTTTAACGCA TGAAGAAGTG AAATTCAAAA CAGGACCTAG
  R
  ACCACTCGTT CTTTCAAACA GCCTCTGGTT GGGGTTCAGT CACACCTGTG CTTGAGAATT
  GGGGCTGCTC AGCTTTTGGG CATCTTTTTC TAAGGAAAAC AAATACATCA TCACCTAACC
  TTGTAGAGGC CCTTCTTACT GCTGCTAAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148937632	ENSMUSSNP5972701	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss319691063	CHEV_1_37315657	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48467266					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37297893 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Gm69908	predicted gene, 69908	1545 bp downstream
Rr409496	regulatory region 409496	158 bp distal