rs48467515 SNP Detail

Summary

• ID
  rs48467515
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:122269721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATCTGC TTGGGTCAGT
  GAGATTTCTT TCCACACTGG TCAGTGGTGT CTGAAGAGAT ACAAGTGCTC AATGTACTCA
  AAACAAGTGA CCACTTATTT ATTGTCCAGC AATAAATGAG ACATCTATTA AGTCACATAC
  AAGACTCAGT GAGTATCACA GAAAGAGGGT GGGAAGAATC TCTGAGATGG AGGAAGGGTG
  G
  TGGTGATGCT GGTGATGCTG GACGGGTGAT GACTTCTGGG AAAGATATGA CTGCTGCACT
  CTTTGACTCA CCATAGCTAT GATTACGTAT GCCAGACGAG TATAACATTA GTCCTGTACG
  GTCAATATTC TATTTAGGGA ACAAGAGATA CTTGTTGATC ACACCCCTTT CTGAGGGTTT
  ATTTATGGTA GTTGGTGGTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147419409	ENSMUSSNP5084923	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48467515					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:122269721 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563981	regulatory region 563981			1361 bp proximal
Slc28a2	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2			Intron
				Noncoding-Transcript-Variant