rs48468443 SNP Detail

Summary

• ID
  rs48468443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47988672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGA ATTTCTGTGG TAGAGTCCAG
  R
  AATCTTTGAT TTCAGCAGCG AAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144805864	ENSMUSSNP3928305	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss322655780	CHEV_8_48620991	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48468443					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47988672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20329	CpG island 20329	1383 bp distal
Gm63731	predicted gene, 63731	within coordinates
Rr186609	regulatory region 186609	671 bp distal
Rr368533	regulatory region 368533	1834 bp downstream
Rr400846	regulatory region 400846	1946 bp downstream
Rwdd4a	RWD domain containing 4A	within coordinates
Tssr77336	transcription start site region 77336	1928 bp downstream