rs48469436 SNP Detail

Summary

• ID
  rs48469436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103572935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCAAAAGA AGAGTGAGGA GCCCGACCCA AGGCACCGGT
  TGTCATGGCA ACCGGGGCGC AGGTCTCCCC AGAGACTCGG TCCCAAGGGA GGAGGCGGGG
  Y
  GGGGCTCCTG GCGGACCAAT GGGGAGAAGC GGAGTGCAGG GTCCCGGACC TGCGGTCCTG
  TCCGCGCGCG GGCGGGGTTG ACTGACAGGG CAAGGGGCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148945511	ENSMUSSNP1442599	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48469436					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103572935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16135	CpG island 16135	within coordinates
Ptpn13	protein tyrosine phosphatase, non-receptor type 13	123 bp upstream
Rr615857	regulatory region 615857	843 bp distal
Rr615858	regulatory region 615858	within coordinates
Rr615859	regulatory region 615859	443 bp proximal
Tssr47557	transcription start site region 47557	112 bp upstream
Tssr47558	transcription start site region 47558	133 bp upstream
Tssr47559	transcription start site region 47559	164 bp upstream
Tssr52160	transcription start site region 52160	651 bp downstream
Tssr52161	transcription start site region 52161	679 bp downstream